phylojunction.distribution.likelihood package

Subpackages

• phylojunction.distribution.likelihood.ODE package
  • Submodules
  • phylojunction.distribution.likelihood.ODE.dn_bisse_ode module
    • bisse_d_eqns()
    • bisse_e_eqns()
    • solve_bisse_ds_es()
  • phylojunction.distribution.likelihood.ODE.dn_mbt_ode module
    • mbt_bisse_d_eqn()
    • mbt_e_eqn()
    • solve_mbt_ds_es()
  • Module contents

Submodules

phylojunction.distribution.likelihood.lik_dn_mbt module

phylojunction.distribution.likelihood.lik_dn_mbt.prune_mbt(ann_tr: AnnotatedTree, pars: Tuple[ndarray], n_states: int, cond_on_survival: bool = True, correct_tip_shuffling: bool = False)

phylojunction.distribution.likelihood.lik_dn_mbt.recursively_do_node(nd: Node, nd_age_dict: Dict[str, float], pars: Tuple[matrix, ndarray], n_states: int, log_norm_factors: List[float]) → ndarray

Module contents