phylojunction.interface.pysidegui package

Subpackages

• phylojunction.interface.pysidegui.pjguipages package
  • Submodules
  • phylojunction.interface.pysidegui.pjguipages.gui_pages module
    • Ui_PJGUIPages
      • Ui_PJGUIPages.retranslateUi()
      • Ui_PJGUIPages.setupUi()
  • Module contents
• phylojunction.interface.pysidegui.pjguiwidgets package
  • Submodules
  • phylojunction.interface.pysidegui.pjguiwidgets.matplotlibwidget module
    • MatplotlibWidget
      • MatplotlibWidget.initialize_axes()
      • MatplotlibWidget.staticMetaObject
  • phylojunction.interface.pysidegui.pjguiwidgets.pj_buttons module
    • PJClearDAGQPushButton
      • PJClearDAGQPushButton.clear_dag_normal
      • PJClearDAGQPushButton.clear_pgm_over
      • PJClearDAGQPushButton.clear_pgm_pressed
      • PJClearDAGQPushButton.enterEvent()
      • PJClearDAGQPushButton.leaveEvent()
      • PJClearDAGQPushButton.mousePressEvent()
      • PJClearDAGQPushButton.mouseReleaseEvent()
      • PJClearDAGQPushButton.staticMetaObject
    • PJPushButton
      • PJPushButton.draw_icon()
      • PJPushButton.paintEvent()
      • PJPushButton.set_active()
      • PJPushButton.set_style()
      • PJPushButton.staticMetaObject
    • PJReDrawQPushButton
      • PJReDrawQPushButton.clear_redraw_normal
      • PJReDrawQPushButton.clear_redraw_over
      • PJReDrawQPushButton.clear_redraw_pressed
      • PJReDrawQPushButton.enterEvent()
      • PJReDrawQPushButton.leaveEvent()
      • PJReDrawQPushButton.mousePressEvent()
      • PJReDrawQPushButton.mouseReleaseEvent()
      • PJReDrawQPushButton.staticMetaObject
    • PJWhiteBackgroundQPushButton
      • PJWhiteBackgroundQPushButton.enterEvent()
      • PJWhiteBackgroundQPushButton.icon_dir_path
      • PJWhiteBackgroundQPushButton.icon_normal
      • PJWhiteBackgroundQPushButton.icon_over
      • PJWhiteBackgroundQPushButton.icon_pressed
      • PJWhiteBackgroundQPushButton.leaveEvent()
      • PJWhiteBackgroundQPushButton.mousePressEvent()
      • PJWhiteBackgroundQPushButton.mouseReleaseEvent()
      • PJWhiteBackgroundQPushButton.staticMetaObject
  • Module contents

Submodules

phylojunction.interface.pysidegui.content_main_window module

class phylojunction.interface.pysidegui.content_main_window.ContentGUIMainWindow

Bases: object

setup_ui(parent)

phylojunction.interface.pysidegui.pj_gui module

class phylojunction.interface.pysidegui.pj_gui.GUIMainWindow

Bases: QMainWindow

all_samples_clicked()

avg_repl_check()

clean_disable_everything(user_reset=False)

coverage_df: DataFrame

do_selected_node_compare_page()

Chose node to get summary statistics and compare against user implementation (implementation comparison menu)

do_selected_node_coverage_page()

Chose node to get values or summary statistics for coverage plot (coverage menu)

do_selected_node_dag_page(spin_buttons_clicked: bool = False)

Display selected node’s string representation and plot it on canvas if possible, for pgm page (model specification menu)

draw_cov()

draw_node_dag(axes, node_dag, sample_idx=None, repl_idx=0, repl_size=1, draw_reconstructed=False) → None

draw_violin()

gui_modeling: GUIModeling

hpd_df: DataFrame

init_and_refresh_radio_spin(node_dag, sample_size, repl_size)

init_top_menus()

input_script_filepath: str

is_avg_repl_check: bool

load_model()

one_sample_clicked()

other_comparison_df: DataFrame

parse_cmd_update_gui()

pj_comparison_df: DataFrame

print_about()

quit_app_button_clicked()

read_compare_csv()

read_coverage_hpd_csv()

read_execute_script()

read_log_files_dir_build_hpd()

redraw_selected_node()

refresh_cmd_history(user_reset=False)

refresh_node_lists()

refresh_selected_node_display_plot_radio()

refresh_selected_node_display_plot_spin()

reset_selection()

selected_node_display(node_dag, do_all_samples, sample_idx=None, repl_idx=0, repl_size=1, display_reconstructed=False)

selected_node_plot(fig_obj, fig_axes, node_dag, do_all_samples, sample_idx=None, repl_idx=0, repl_size=1, draw_reconstructed=False)

Plot DAG node on ‘node_display_fig_axes’ (Axes object) scoped to ‘call_gui()’, then update canvas with new plot

selected_node_read(node_name: str)

show_cmd_log_page()

show_compare_page()

show_coverage_page()

show_pgm_page()

show_settings_page()

show_warnings_page()

staticMetaObject = PySide6.QtCore.QMetaObject("GUIMainWindow" inherits "QMainWindow": )

toggle_button_animation()

write_data_to_dir()

write_model_to_file(prefix: str = '')

write_plot_to_file(fig_obj, axes_obj)

write_smaps_to_dir()

class phylojunction.interface.pysidegui.pj_gui.GUIModeling

Bases: object

clear()

cmd_log()

cmd_log_list: List[str]

dag_obj: DirectedAcyclicGraph

parse_cmd_update_pgm(cmd_line_list, gui_main_window_obj, clear_cmd_log_list: bool = False)

update_dag_random_seed(a_random_seed: int)

phylojunction.interface.pysidegui.pj_gui.call_gui()

Module contents